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IJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis. Computer Vision and Image Understanding, 93(2), 206≢20. A linear-time component-labeling algorithm using contour tracing technique. The algorithm used for connected component labeling is:\r >The IJBlob library indentifying connected components in binary images. You'll get a montage of the currently selected orthogonal view.\r With the mouse, choose which are the sections of interest to you and without moving the mouse, press F2. To use it, open an image z-stack and open the orthogonal viewer. This macro, once installed, lets users create a montage with the currently open orthogonal views and selection guides. >ImageJ's orthogonal viewer for 3D stacks doesn't let you easily save the current orthogonal view. Pedro Almada wrote a plugin to save the current orthogonal views as montage. Slicing plane could be interactively moved by dragging crosses. Rdfs:comment """A menu item in ImageJ that allows you to inspect a 3D stack with orthogonal views (XY, XZ, YZ planes). Processing can be distributed on multiple cores and executed in batch mode. Included are two programs with graphical interface: 3dmod, for displaying and segmenting 2D images and 3D volumes etomo, for reconstructing tomographic volumes from tilt series of images. The package contains tools for assembling and aligning data within multiple types and sizes of image stacks, viewing 3-D data from any orientation, and modeling and display of the image files.
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Rdfs:comment """IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections. Nb:hasAuthor "David Mastronarde, Rick Gaudette, Sue Held, Jim Kremer, and Quanren Xiong " \rĪ short tutorial is available in the plugin web page (above). Rdfs:comment """MATLAB is famous, so this page is only for being the landing page for components and workflows.\rĪn ImageJ plugin for selecting a plane in focus among multiple slices image stack. ĭc:title "selfcomplementaryTopHatGreyScale ". The GUI is written using cross-platform wxWidgets library.
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It is a stand-alone, easy to install application written in C++ language. It has a modular design and is extensible via plug-ins. It can be used for analysis of a collection of 2D images or time lapse series of 2D or 3D images as well. It is focused on quantification of spatial properties of many objects and their mutual spatial relations in a collection of many 3D images.
It addresses image capture, raw image correction, image segmentation, quantification of segmented objects and their spatial arrangement, volume rendering, and statistical evaluation.\r Rdfs:comment """Acquiarium is for carrying out the common pipeline of many spatial cell studies using fluorescence microscopy. Takes images with detections already done on it.\r
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Rdfs:comment """Automatic registration in 2D or 3D based on detection or binary mask.
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